bioweb: molecular modelling group / grupo de modelado molecular

http://www.cbm.csic.es/bioweb

 

Jesús Ignacio Mendieta Moreno
(Alcalá de Henares - Madrid. 1985)
PhD student / Estudiante de doctorado.
Assistant teacher / Profesor ayudante UAM.

Centro de Biología Molecular "Severo Ochoa".
C/ Nicolás Cabrera, 1.
Campus UAM. Cantoblanco, 28049 Madrid. Spain.
Tel: (+34) 91-196-4662   Fax: (+34) 91-196-4420
e-mail: jimm@cbm.csic.es
URL: http://www.cbm.csic.es/bioweb

Academic degrees / Títulos académicos
    2008. B.Sc. in Physics / Diplomado en Física (Universidad Autónoma de Madrid).
    2010. M. Sc. in Physics / Licenciado en Física (Universidad Autónoma de Madrid).
    2011. Postgraduate Master in Biophysics / Máster Universitario en Biofísica (Universidad Autónoma de Madrid)
Career / Trayectoria profesional.
    2010. PhD student at the Molecular Modelling Group - CBMSO (Madrid) / Estudiante de doctorado en el Grupo de Modelado Molecular - CBMSO (Madrid).
    2010-2011. Pre-doctoral fellowship. "Severo Ochoa" Foundation / Beca predoctoral. Fundación "Severo Ochoa".
    2011-. INNCORPORA-TU Contract - Ministry of Economy and Competitiveness / Contrato INNCORPORA-TU del Ministerio de Economía y Competitividad.
Participation in R&D contracts / Participación en contratos de I+D. Publications / Publicaciones (PubMed)
(A: article/artículo; R: review/revisión; C: book chapter/capítulo de libro)

 2017:
 
(A).-
Marcos-Alcalde, I., Mendieta-Moreno, J.I., Puisac, B., Gil-Rodríguez, M.C., Hernández-Marcos, M., Soler-Polo, D., Ramos, F.J., Ortega, J., Pié, J., Mendieta, J. & Gómez-Puertas, P. (2017). Two-step ATP-driven opening of cohesin head. Scientific Reports 7, 3266.  [PubMed]  [PDF]  [http://dx.doi.org/10.1038/s41598-017-03118-9]

 2016:
 
(A).-
Mendieta-Moreno, J., Trabada, D., Mendieta, J., Lewis, J., Gómez-Puertas, P. & Ortega, J. (2016). Quantum Mechanics / Molecular Mechanics Free Energy Maps and Nonadiabatic Simulations for a Photochemical Reaction in DNA: Cyclobutane Thymine Dimer. Journal of Physical Chemistry Letters 7, 4391–4397.  [PubMed]  [PDF]  [http://dx.doi.org/10.1021/acs.jpclett.6b02168]

 2015:
 
7(A).-
Marcos-Alcalde, I., Setoain, J., Mendieta-Moreno, J.I., Mendieta, J. & Gómez-Puertas, P. (2015). MEPSA: minimum energy pathway analysis for energy landscapes. Bioinformatics 31, 3853-3855.  [PubMed]  [PDF]  [http://dx.doi.org/10.1093/bioinformatics/btv453]
6(A).-
Mendieta-Moreno, J.I., Marcos-Alcalde, I., Trabada, D.G., Gómez-Puertas, P., Ortega, J. & Mendieta, J. (2015). A practical Quantum Mechanics Molecular Mechanics method for the dynamical study of reactions in biomolecules. Advances in Protein Chemistry and Structural Biology 100, 67-88.  [PubMed]  [PDF]  [http://dx.doi.org/10.1016/bs.apcsb.2015.06.003]

 2014:
 
5(A).-
Mendieta-Moreno, J.I., Walker, R., Lewis, J., *Gómez-Puertas, P., ^Mendieta, J. & *^Ortega, J. (*Corresponding authors; ^Co-last authors) (2014). FIREBALL/AMBER: An efficient local-orbital DFT QM/MM method for biomolecular systems. Journal of Chemical Theory and Computation 10, 2185–2193.  [PDF]  [http://dx.doi.org/10.1021/ct500033w]

 2013:
 
4(A).-
Martín-García, F., Mendieta-Moreno, J.I., Marcos-Alcalde, I, *Gómez-Puertas, P. & Mendieta, J. (2013). Simulation of catalytic water activation in mitochondrial F1-ATPase using a hybrid quantum mechanics/molecular mechanics approach: An alternative role for ß-Glu 188. Biochemistry 52, 959-966.  [PubMed]  [PDF]  [Supp. Inf. PDF]  [Supp. video. AVI]  [http://dx.doi.org/10.1021/bi301109x]

 2012:
 
3(A).-
Martín-García, F., Salvarelli, E., Mendieta-Moreno, J.I., Vicente, M., Mingorance, J., Mendieta, J. & Gómez-Puertas, P. (2012). Molecular dynamics simulation of GTPase activity in polymers of the cell division protein FtsZ. FEBS Letters 586, 1236–1239.  [PubMed]  [PDF]  [Supp. Inf. PDF]  [Supp. video. AVI]  [Supp. video. MOV -HD-]  [http://dx.doi.org/10.1016/j.febslet.2012.03.042]
2(A).-
Martín-García, F., Mendieta-Moreno, J.I., Mendieta, J. & Gómez-Puertas, P. (2012). Molecular dynamics analysis of conformational change of paramyxovirus F protein during the initial steps of membrane fusion. Biochemical and Biophysical Research Communications 420, 42-47.  [PubMed]  [PDF]  [Supp. Inf. PDF]  [http://dx.doi.org/10.1016/j.bbrc.2012.02.112]
1(A).-
Martín-García, F., Mendieta-Moreno, J.I., López-Viñas, E., *Gómez-Puertas, P. & Mendieta, J. (* Corresponding author) (2012). The Role of Gln(61) in HRas GTP Hydrolysis: A Quantum Mechanics/Molecular Mechanics Study. Biophysical Journal 102, 152-157.  [PubMed]  [PDF]  [Supp. Inf. PDF]  [Supp. video. AVI]  [Supp. video. AVI -HD-]  [http://dx.doi.org/10.1016/j.bpj.2011.11.4005

Meetings / Congresos
  • Martín-García, F., Salvarelli, E., Mendieta-Moreno, JI., Vicente, M., Mingorance, J., Mendieta, J. & Gómez-Puertas, P. (2012). Molecular dynamics simulation of GTPase activity in polymers of the cell division protein FtsZ. EMBO workshop "Reconstructing the essential bacterial cell cycle machinery". La Granja - Segovia (Spain).
BIOWEB: MOLECULAR MODELLING GROUP
Centro de Biología Molecular "Severo Ochoa" (CSIC-UAM).
http://www.cbm.csic.es/bioweb
C/ Nicolás Cabrera, 1. Campus UAM, Cantoblanco.
28049 Madrid. Spain
Tel: (+34) 91 196 4662 / 4663
Fax: (+34) 91 196 4420
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